Me

My CV (including list of publications)
My software
My publications
My PhD thesis
My Honours thesis
My teaching
My blog
My photo site
My bookmarks
My citation database

Cool people

Yulan Shen
Amy Glen
Aaron Clauset
Sabrina Spencer
Anne
Justin Viiret
Dr William Tozier
Dr Cosma Shalizi

Blackboards by famous people

Analyse des Équations Déterminées
par Jean Baptiste Joseph Fourier
Title page (JPEG)
Title page (JPEG2000)
Preface (JPEG)
Preface (JPEG2000)

Publications

Note: ∗ denotes an unrefereed publication, click on the blue dots at the end of each item for pdf versions :)

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Signal processing and statistical methods in analysis of text and DNA”, Proc SPIE: Biomedical Applications of Micro and Nanoengineering 4937, ed. Dan V. Nicolau, Melbourne, Australia Dec. 16-18, 2002.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Statistical techniques for text classification based on word recurrence intervals”, Fluctuations and Noise Letters 3(1), pp. L1-L10, 2003.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Stochastic evolution and multifractal classification of prokaryotes”, SPIE: Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems 5110, ed. Sergy M. Bezrukov, Santa Fe, USA, June 1-4, 2003.

Sabrina L. Spencer, Matthew J. Berryman, Sara Dempster and José A. García, “Two models for the multistep transformation to cancer”, Proceedings of the Santa Fe Institute Summer School 2003.∗

Matthew J. Berryman, Wei-Li Khoo, Hiep Nguyen, Erin O'Neill, Andrew Allison and Derek Abbott, “Exploring tradeoffs in pleiotropy and redundancy using evolutionary computing”, Proc. SPIE: BioMEMS and Nanotechnology 5275, ed. Dan V. Nicolau, Perth, Australia, Dec. 9-12, 2003.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Cellular automata for exploring gene regulation in Drosophila ”, Proc. SPIE: BioMEMS and Nanotechnology 5275, ed. Dan V. Nicolau, Perth, Australia, Dec. 9-12, 2003.

Matthew J. Berryman, Sabrina L. Spencer, Andrew Allison and Derek Abbott, “Fluctuations and noise in cancer development and treatment”,Proc. SPIE: Noise in Complex Systems and Stochastic Dynamics 5471, Maspalomas, Spain, May 25-28, 2004.

Matthew J. Berryman, Sheila Messer, Andrew Allison and Derek Abbott, “Techniques for noise removal from EEG, EOG and air flow signals in sleep patients”, Proc. SPIE: Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems 5467, Maspalomas, Spain, May 25-28, 2004.

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Optimizing genetic algorithm strategies for evolving networks”, Proc. SPIE: Noise in Communication 5473, Maspalomas, Spain, May 25-28, 2004.∗

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Mutual information for examining correlations in DNA”, Fluctuations and Noise Letters 4(2), pp. L237-246, 2004.

Sabrina L. Spencer, Matthew J. Berryman, José A. García and Derek Abbott, “An ordinary differential equation model for the multistep transformation to cancer”, Journal of Theoretical Biology 231(4), pp. 515-524 (2004).

Matthew J. Berryman, Andrew Allison and Derek Abbott, “Gene network analysis and design”, Proc. SPIE: Biomedical Applications of Micro- and Nanoengineering 5651, Sydney, Australia, Dec. 12-15, 2004.

Melissa Ryan, Matthew J. Berryman and Derek Abbott, “Modeling the effect of p53 on tumor heterogeneity and the mutator phenotype”, Proc. SPIE: Biomedical Applications of Micro- and Nanoengineering 5651, Sydney, Australia, Dec. 12-15, 2004.

Thomas J.A. Baker, Matthew Botting, Matthew J. Berryman, Alex Ryan, Anne-Marie Grisogono and Derek Abbott, “Adaptive battle agents: emergence in artificial life combat models”, Proc. SPIE: Smart Structures, Devices, and Systems 5649, Sydney, Australia, Dec. 12-15, 2004.

Madeleine Sabordo, Shong, Y. Chai, Matthew J. Berryman and Derek Abbott, “Who wrote the Letter to the Hebrews? Data mining for detection of text authorshipe”, Proc. SPIE: Smart Structures, Devices, and Systems 5649, Sydney, Australia, Dec. 12-15, 2004.

Matthew J. Berryman, Scott W. Coussens, Yvonne Pamula, Declan Kennedy, Kurt Lushington, Cosma Shalizi, Andrew Allison, A. James Martin, David Saint and Derek Abbott, “Nonlinear aspects of the EEG during sleep in children”, Proc. SPIE: Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems 5841, Austin, Texas, USA, May 24-26, 2005.

Matthew J. Berryman, Andrew Allison, Christopher R. Wilkinson and Derek Abbott, “Review of signal processing in genetics”, Fluctuations and Noise Letters 5(4), pp. R13-R35, 2005.

G. Korniss, M.B. Hastings, K.E. Bassler, M.J. Berryman, B. Kozma and D. Abbott, “Scaling in small-world resistor networks”, Physics Letters A 350(5-6), pp. 324-330, 2006.

Matthew J. Berryman, Neil F. Johnson and Derek Abbott, “Contagions across networks: colds and markets”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

Kim L. Lim, Isaac Mann, Ricardo Santos, Brad Tobin, Matthew J. Berryman, Alex Ryan and Derek Abbott, “Adaptive battle agents: complex adaptive combat models”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.
Zhiyang Ong, Andy H.-W. Lo, Matthew J. Berryman and Derek Abbott, “Multi-objective evolutionary algorithm for investigating the trade-off between pleiotropy and redundancy”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

David P. Baraglia, Matthew J. Berryman, Scott W. Coussens, Yvonne Pamula, Declan Kennedy, A. James Martin and Derek Abbott, “Automated sleep scoring and sleep apnea detection in children”,Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

Talis J. Putnins, Domenic J. Signoriello, Samant Jain, Matthew J. Berryman and Derek Abbott, “Advanced text authorship detection methods and their application to biblical texts”, Proc. SPIE: Complex Systems 6039 ed. Axel Bender, Brisbane, Qld., Australia, December 11-14, 2005.

Matthew J. Berryman and Derek Abbott, “Mathematical principles underlying genetic structures”, From Stars to Brains: Pathways to consciousness in the natural world, Australian Academy of Science, ANU, Canberra, ACT, Australia, June 20-21, 2006.∗
Matthew J. Berryman, “Marital Infidelity and its Effect on Pathogen Diversity”, Proc. SPIE: Complexity and Nonlinear Dynamics 6417 ed. Axel Bender, Adelaide, SA, Australia, December 10-13, 2006.